268331 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268331 chr_2 WD40 1785836 1788919 - WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7452449 Thaps268331.4, Thaps268331.2, Thaps268331.3, Thaps268331.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0257
 0.20

Most Highly Correlated Transcripts

bd1876

(bd1876) NatB_MDM20 superfamily
0.9716

268688

hypothetical protein
0.9456

32374

TPR
0.9445

22582

S1
0.9412

36434

DUF1253
0.9387

21082

Cupin_8 superfamily
0.9302

268678

(Tp_Myb2R3) ZUO1
0.9238

33425

BMS1
0.9232

20985

COG5593
0.9189

39022

COG2319
0.9161

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 81.9976 3.28E-17 70 - 428 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 81.9976 3.28E-17 70 - 428 superfamily 238121
Utp12 superfamily Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats.... - 81.8696 3.37E-18 798 - 904 superfamily 252308
Utp12 superfamily Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats.... - 81.8696 3.37E-18 798 - 904 superfamily 252308
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 81.9976 3.28E-17 70 - 428 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 89.3775 6.43E-19 63 - 603 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_25666 PHATR_25666 213569 204669 467193 Cre06.g254150.t1.2 AT1G15440.2 325739

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0004197 GO:0006508 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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