22844 Choline_transpoThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22844	chr_5	Choline_transpo	1698795	1700499	+	Choline_transpo

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445203	Thaps22844.2, Thaps22844.1, Thaps22844.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0172

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0060	0.47	0.0000000027 0.00038

Most Highly Correlated Transcripts

25944 p450 superfamily 0.9339	263219 MFS_1 0.8976	1762 PRA1 superfamily 0.8872	268640 Glyco_hydro_47 0.8818	37793 hypothetical protein 0.8813	10823 hypothetical protein 0.8782
261844 PLN02270 0.8776	268931 hypothetical protein 0.8752	269113 M3_like 0.873	262016 Aa_trans superfamily 0.8729

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Choline_transpo superfamily		Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline...	-	225.173	8.96E-69	143 - 469	superfamily	252644
Choline_transpo superfamily		Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline...	-	225.173	8.96E-69	143 - 469	superfamily	252644

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46998	PHATRDRAFT_46998	Not available	Not available	Not available	Not available	AT1G25500.3	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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