22951 BetA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22951 chr_6 BetA 122755 125081 - BetA

Synonyms

NCBI ID Ensembl Genomes exon ID
7442326 Thaps22951.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0364

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

bd686

(bd686) Glyco_transf_22 superfamily
0.9214

bd923

(bd923) NA
0.9135

10795

hypothetical protein
0.8468

270332

hypothetical protein
0.799

11229

COG1272
0.7869

264834

HA
0.7782

22957

hypothetical protein
0.7657

14293

hypothetical protein
0.7581

bd524

(bd524) NA
0.7575

24587

Homoserine_dh
0.75

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GMC_oxred_C superfamily GMC oxidoreductase; This domain found associated with pfam00732. - 92.4486 1.23E-21 549 - 739 superfamily 253079
GMC_oxred_C superfamily GMC oxidoreductase; This domain found associated with pfam00732. - 92.4486 1.23E-21 549 - 739 superfamily 253079
BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] - 114.473 7.19E-27 382 - 742 multi-dom 225186

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34413 PHATRDRAFT_34413 199079 206453 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0016614 GO:0050660 GO:0008812 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0008812

choline dehydrogenase activity

Details: 
Catalysis of the reaction: A + choline = AH(2) + betaine aldehyde.
GO Category: 
MF

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