23095 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23095	chr_6	UBCc	852801	853415	+	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445929	Thaps23095.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0147	0.38	0.21 17000

Most Highly Correlated Transcripts

bd1939 (bd1939) NA 0.8898	9591 efThoc1 superfamily 0.8626	15605 PKc_like superfamily 0.8609	bd381 (bd381) NA 0.8504	34533 AAA_11 0.8392	20800 XRN_N superfamily 0.8317
1693 hypothetical protein 0.8299	35129 (Tp_Myb2R9) PLN03142 0.8297	22487 COG5222 0.8281	24744 H2TH superfamily 0.8266

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	153.127	2.60E-47	10 - 141	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	153.127	2.60E-47	10 - 141	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47555	PHATRDRAFT_47555	177939	250679	Not available	Cre05.g240150.t1.2	AT5G25760.2	540360

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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