23150 FAAL
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23150 chr_6 FAAL 1150702 1153291 - FAAL

Synonyms

NCBI ID Ensembl Genomes exon ID
7442381 Thaps23150.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0480

Most Highly Correlated Transcripts

263599

COG3899
0.9152

12836

EEP superfamily
0.9121

22265

hypothetical protein
0.9066

263610

COG3899
0.9044

6068

KH-I
0.8982

5604

hypothetical protein
0.8975

22928

hypothetical protein
0.8943

22618

SF1_like-KH
0.8899

20824

hypothetical protein
0.8893

8130

hypothetical protein
0.8884

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAAL Fatty acyl-AMP ligase (FAAL); FAAL belongs to the class I adenylate forming enzyme family and is... cl17068 575.683 0 54 - 665 specific 213297
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 575.683 0 54 - 665 superfamily 266508
PRK05850 acyl-CoA synthetase; Validated - 325.358 3.78E-100 22 - 666 multi-dom 235624

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41238 PHATRDRAFT_41238 262994 262284 41407 Not available Not available 469747

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0016207 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016207

4-coumarate-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + 4-coumarate + CoA = AMP + diphosphate + 4-coumaroyl-CoA.
GO Category: 
MF

Add comment

Log in to post comments