23196 RRM_SF superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23196	chr_6	RRM_SF superfamily	1327182	1328484	+	RRM_SF superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453275	Thaps23196.3, Thaps23196.2, Thaps23196.5, Thaps23196.4, Thaps23196.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0389

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0011	0.46	23000000 7400

Most Highly Correlated Transcripts

bd1125 (bd1125) LSm4 0.806	bd909 (bd909) NA 0.7833	bd174 (bd174) Tim17 superfamily 0.7775	bd1124 (bd1124) LSm4 0.7417	bd1455 (bd1455) FtsH_fam 0.7229	bd911 (bd911) GH18_chitinase-like superfamily 0.7186
bd258 (bd258) HU 0.707	bd1662 (bd1662) TIGR00367 0.7062	7341 (Tpt2) tpt 0.6865	bd1464 (bd1464) CAP_ED 0.6841

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	86.2735	2.04E-21	190 - 272	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	79.2206	2.79E-17	179 - 302	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12366	PHATRDRAFT_12366	182133	164450	Not available	Cre13.g586916.t1.1	AT3G13570.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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