23242 PRK00142Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23242	chr_6	PRK00142	1564832	1566698	+	PRK00142

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444555	Thaps23242.2, Thaps23242.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0284	0.26	0.16 0.049

Most Highly Correlated Transcripts

23210 hypothetical protein 0.9565	2392 hypothetical protein 0.9414	24180 PhyH 0.9411	268136 COG1054 0.9371	5104 hypothetical protein 0.9339	22099 hypothetical protein 0.9316
34735 DRE_TIM_metallolyase superfamily 0.9286	30454 Brix 0.9238	25746 hypothetical protein 0.9223	268027 Met_10 0.9195

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RHOD superfamily		Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese...	-	128.851	7.48E-36	146 - 261	superfamily	260205
PRK00142		putative rhodanese-related sulfurtransferase; Provisional	-	223.571	2.73E-68	32 - 356	multi-dom	234663

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	243307	162782	194568	Not available	AT1G09280.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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