10905 S1_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10905	chr_18	S1_like superfamily	416979	417686	+	S1_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442983	Thaps10905.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0267

Most Highly Correlated Transcripts

267979 HCO3_cotransp superfamily 0.8645	25247 Nudix_Hydrolase superfamily 0.8643	268443 SAICAR_synt_Sc 0.8637	23290 hypothetical protein 0.8558	22031 Sin_N superfamily 0.8511	31259 HA 0.8497
38258 ATM1 0.8484	9017 hypothetical protein 0.8433	20930 DRE_TIM_metallolyase superfamily 0.8432	38466 SpoU_methylase superfamily 0.8355

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	79.212	4.45E-19	92 - 193	superfamily	263921
PRK09521		exosome complex RNA-binding protein Csl4; Provisional	-	74.2407	1.20E-16	8 - 226	multi-dom	236547

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37291	PHATRDRAFT_37291	187222	179017	73908	Cre07.g312750.t1.2	AT5G38890.1	Not available

KEGG

KEGG description	KEGG Pathway
RNA degradation	map03018

GO Terms

GO:0000175 GO:0004534 GO:0016896 -

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