2467 COG5325
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2467 chr_2 COG5325 1072421 1073874 - COG5325

Synonyms

NCBI ID Ensembl Genomes exon ID
7444643 Thaps2467.5, Thaps2467.1, Thaps2467.3, Thaps2467.2, Thaps2467.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0212

Most Highly Correlated Transcripts

30701

PRK05279
0.9213

37934

GRX_PICOT_like
0.9081

21249

hypothetical protein
0.9056

36641

Aldolase_Class_I superfamily
0.9049

41697

TRX_family
0.9047

22673

NA
0.8977

26991

GRX_GRXh_1_2_like
0.8966

268840

CBS_pair_10
0.8935

9115

DnaJ
0.8928

37920

cyclophilin_ABH_like
0.8919

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain;... cl00152 65.9798 7.40E-14 304 - 363 specific 238115
t_SNARE superfamily Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain;... - 65.9798 7.40E-14 304 - 363 superfamily 260219
COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] - 97.9895 1.41E-23 106 - 380 multi-dom 227635

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13459 PHATRDRAFT_13459 184200 183860 Not available Cre12.g507450.t1.2 AT4G02195.1 300143

KEGG

KEGG description KEGG Pathway
SNARE interactions in vesicular transport map04130

GO Terms

Not available -

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