25015 CAP10 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25015 chr_15 CAP10 superfamily 522532 525748 + CAP10 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442017 Thaps25015.3, Thaps25015.2, Thaps25015.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0335

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0095
 0.37

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.8975

bd1934

(bd1934) NA
0.896

bd690

(bd690) NA
0.8795

bd1806

(bd1806) AAT_I superfamily
0.8778

bd738

(bd738) NA
0.851

bd1801

(bd1801) NA
0.8475

bd1946

(bd1946) NA
0.847

3196

hypothetical protein
0.8356

22355

hypothetical protein
0.8313

bd1840

(bd1840) NA
0.8241

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP10 superfamily Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme. - 65.1358 8.09E-12 462 - 553 superfamily 214773

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 128552 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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