25139 RRN3 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25139	chr_16a	RRN3 superfamily	298957	302497	+	RRN3 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450005	Thaps25139.3, Thaps25139.1, Thaps25139.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0230	0.24	0.00011 150

Most Highly Correlated Transcripts

268766 MdlB 0.9457	22448 hypothetical protein 0.9336	34027 SrmB 0.9267	13378 PRK13762 0.9261	42152 WD40 0.9255	29705 18S_RNA_Rcl1p 0.9251
39540 Alpha_ANH_like_II 0.9237	262041 MIF4G 0.9228	24878 COG0412 0.9221	35224 Aldo_ket_red 0.9211

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRN3 superfamily		RNA polymerase I specific transcription initiation factor RRN3; This family consists of several...	-	168.649	5.12E-44	452 - 1029	superfamily	253152

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35171	PHATRDRAFT_35171	241676	293144	Not available	Not available	Not available	328981

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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