25153 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25153	chr_16a	WD40 superfamily	372774	374333	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442543	Thaps25153.2, Thaps25153.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0359

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0064	0.41	0.00087 7.6

Most Highly Correlated Transcripts

8598 hypothetical protein 0.7961	262767 LRR_RI superfamily 0.7917	bd624 (bd624) Glyco_transf_34 superfamily 0.7908	8740 hypothetical protein 0.7906	9650 hypothetical protein 0.7887	9111 hypothetical protein 0.7878
bd731 (bd731) NA 0.7836	5599 HVSL superfamily 0.7831	24049 hypothetical protein 0.7831	25541 MPP_PhoD 0.7789

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	118.206	2.55E-30	36 - 411	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	95.1555	1.63E-21	29 - 410	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_18217	PHATRDRAFT_18217	179748	263512	450678	Cre16.g675301.t1.1	AT5G64730.1	483561

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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