10985 UBCc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10985 chr_18 UBCc 626952 627999 - UBCc

Synonyms

NCBI ID Ensembl Genomes exon ID
7444810 Thaps10985.3, Thaps10985.1, Thaps10985.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0393

Most Highly Correlated Transcripts

24686

hypothetical protein
0.874

270222

0.8622

6114

Guanylate_cyc_2 superfamily
0.8504

24658

DUF605
0.8405

269341

SGS
0.8327

269593

(RPT4) RPT1
0.8297

7696

2_5_RNA_ligase2
0.829

11664

DUF3510
0.8265

25338

hypothetical protein
0.8259

2124

Pan_kinase superfamily
0.8247

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated... cl00154 183.943 4.73E-59 7 - 151 specific 238117
UBCc superfamily Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated... - 183.943 4.73E-59 7 - 151 superfamily 260221

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30389 PHATRDRAFT_30389 273070 324286 429671 Cre01.g046850.t1.2 AT5G50870.1 518543

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0003700 GO:0006355 GO:0004842 -

GO:0004840

NA

Details: 
NA
GO Category: 
NA

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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