25878 PRK07206Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25878	chr_23	PRK07206	414060	417528	+	PRK07206

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448913	Thaps25878.4, Thaps25878.6, Thaps25878.2, Thaps25878.5, Thaps25878.3, Thaps25878.1, Thaps25878.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0321

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0258	0.30	6400000 0.019

Most Highly Correlated Transcripts

7796 ANK 0.8495	4066 hypothetical protein 0.8319	261161 AdoMet_MTases superfamily 0.8128	2010 hypothetical protein 0.8086	5119 MATE_like superfamily 0.8003	9329 hypothetical protein 0.7987
11205 hypothetical protein 0.7866	4320 hypothetical protein 0.7852	8439 NADB_Rossmann superfamily 0.7816	25239 hypothetical protein 0.7771

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ATP-grasp_4		ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent...	cl17255	103.497	6.83E-25	159 - 342	specific	257854
ATP-grasp_4 superfamily		ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent...	-	103.497	6.83E-25	159 - 342	superfamily	266590
ATP-grasp_4		ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent...	cl17255	103.497	6.83E-25	159 - 342	specific	257854
ATP-grasp_4 superfamily		ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent...	-	103.497	6.83E-25	159 - 342	superfamily	266590
PRK07206		hypothetical protein; Provisional	-	210.654	8.87E-60	20 - 463	multi-dom	180883
PRK07206		hypothetical protein; Provisional	-	210.654	8.87E-60	20 - 463	multi-dom	180883

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	362618

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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