260942 YjgF_YER057c_UK114_like_1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
260942	chr_1	YjgF_YER057c_UK114_like_1	1444686	1445518	-	YjgF_YER057c_UK114_like_1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451473	Thaps260942.2, Thaps260942.1, Thaps260942.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0017

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0051	0.39	0.0021 3.2

Most Highly Correlated Transcripts

bd2050 (bd2050) rpoC2 0.918	bd208 (bd208) DUF3529 0.9159	bd1380 (bd1380) ycf39 0.8883	270222 0.888	bd1306 (bd1306) NA 0.882	32201 Cob-chelat-sub 0.88
575 PRK00062 0.8769	bd1216 (bd1216) Delta6-FADS-like 0.8727	261232 URO-D 0.8716	35878 PLN02307 0.8696

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
YjgF_YER057c_UK114_like_1		This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in...	cl10015	184.201	2.97E-59	44 - 190	specific	100006
YjgF_YER057c_UK114_family superfamily		YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and...	-	184.201	2.97E-59	44 - 190	superfamily	263944

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47655	PHATRDRAFT_47655	270882	283885	203870	Not available	Not available	347462

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments