261002 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261002	chr_1	WD40 superfamily	1787214	1788497	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443111	Thaps261002.1, Thaps261002.4, Thaps261002.2, Thaps261002.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0325

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0275	0.38	19 140000

Most Highly Correlated Transcripts

bd877 (bd877) NA 0.931	bd643 (bd643) NA 0.8931	38011 PKc_like superfamily 0.8902	6997 hypothetical protein 0.8879	31406 (ARF4) Arl3 0.8865	11563 hypothetical protein 0.886
bd690 (bd690) NA 0.8821	261019 HECTc 0.88	13326 Choline_transpo 0.8789	21090 hypothetical protein 0.8782

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	73.5232	3.52E-15	82 - 351	superfamily	238121

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	429492	Cre16.g672600.t1.2	Not available	534417

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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