261063 Lactamase_B_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261063	chr_1	Lactamase_B_2	2110995	2112187	+	Lactamase_B_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445520	Thaps261063.5, Thaps261063.2, Thaps261063.6, Thaps261063.3, Thaps261063.1, Thaps261063.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0317

Most Highly Correlated Transcripts

37638 HrpA 0.9309	32217 MA3 0.9183	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.9173	264679 Syja_N 0.9109	32704 PKc_like superfamily 0.9061	23952 hypothetical protein 0.9056
262797 Sec7 0.9053	11371 hypothetical protein 0.9047	5075 hypothetical protein 0.9017	168 (RPB1) PRK08566 0.8998

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Lactamase_B_2		Beta-lactamase superfamily domain; This family is part of the beta-lactamase superfamily and is...	cl00446	101.095	8.11E-26	38 - 242	specific	257238
Lactamase_B superfamily		Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily.	-	101.095	8.11E-26	38 - 242	superfamily	260426

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments