261225 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261225	chr_2	COG3899	299063	303230	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442217	Thaps261225.2, Thaps261225.3, Thaps261225.4, Thaps261225.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0396

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0243	0.36	2600 820

Most Highly Correlated Transcripts

21090 hypothetical protein 0.8895	24796 hypothetical protein 0.8863	24682 hypothetical protein 0.8771	1900 hypothetical protein 0.8743	23346 hypothetical protein 0.8738	21535 hypothetical protein 0.8725
264610 Prolidase 0.8667	268232 COG3899 0.8653	24492 Lipase_3 0.8609	11307 ABC_ATPase superfamily 0.8586

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	88.2885	1.13E-19	310 - 515	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	88.2885	1.13E-19	310 - 515	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	266.957	5.94E-75	311 - 1172	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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