261635 (pcna) PLN00057Thalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261635	chr_3	(pcna) PLN00057	133281	134163	+	PLN00057

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452799	Thaps261635.1, Thaps261635.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0086

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0241	0.29	480 100000

Most Highly Correlated Transcripts

bd439 (bd439) POLBc_alpha 0.9536	35387 (cdc2) PKc_like superfamily 0.936	bd1983 (bd1983) RecA-like_NTPases superfamily 0.9281	1622 AE_Prim_S 0.9228	bd1081 (bd1081) NA 0.9185	261327 NADB_Rossmann superfamily 0.9157
32661 ABC_ATPase superfamily 0.9156	3787 DNA_pol_E_B 0.9143	6356 hypothetical protein 0.911	22301 (PMM1) PLN02423 0.907

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PCNA superfamily	Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase...	-	281.825	7.52E-95	4 - 256	superfamily	238322
PCNA superfamily	Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase...	-	281.825	7.52E-95	4 - 256	superfamily	238322
PLN00057	proliferating cell nuclear antigen; Provisional	-	462.963	6.88E-166	1 - 261	multi-dom	177688

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_29196	PHATRDRAFT_29196	203554	240926	456826	Cre12.g515850.t1.2	AT1G07370.1	350409

KEGG

KEGG description	KEGG Pathway
Mismatch repair	map03430

GO Terms

GO:0003677 GO:0005634 GO:0005660 GO:0006275 GO:0030337 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

GO Category:

GO:0005660

Details:

GO Category:

GO:0006275

regulation of DNA replication

Details:

Any process that modulates the frequency, rate or extent of DNA replication.

GO Category:

GO:0030337

DNA polymerase processivity factor activity

Details:

An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

261635 (pcna) PLN00057
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0005634

GO:0005660

GO:0006275

GO:0030337

GO:0003887

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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