3787 DNA_pol_E_B
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3787 chr_3 DNA_pol_E_B 1799727 1802017 - DNA_pol_E_B

Synonyms

NCBI ID Ensembl Genomes exon ID
7449563 Thaps3787.2, Thaps3787.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0176
 0.34

Most Highly Correlated Transcripts

261781

(MutS) MutS
0.9375

bd843

(bd843) NA
0.9296

bd529

(bd529) SNF2_N
0.9191

261635

(pcna) PLN00057
0.9143

bd890

(bd890) NA
0.9088

bd439

(bd439) POLBc_alpha
0.9085

11492

hypothetical protein
0.9077

bd1078

(bd1078) NA
0.9073

1622

AE_Prim_S
0.9051

bd624

(bd624) Glyco_transf_34 superfamily
0.9039

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DNA_pol_E_B DNA polymerase alpha/epsilon subunit B; This family contains a number of DNA polymerase subunits.... cl13995 155.138 2.99E-43 412 - 660 specific 252332
MPP_superfamily superfamily metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known... - 155.138 2.99E-43 412 - 660 superfamily 265413

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
262034 Not available 161219 318366 Not available Cre01.g017450.t1.1 AT1G67630.1 480522

KEGG

KEGG description KEGG Pathway
DNA replication map03030

GO Terms

GO:0005634 GO:0006260 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006260

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

GO:0003887

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

GO:0003889

NA

Details: 
NA
GO Category: 
NA

GO:0003890

NA

Details: 
NA
GO Category: 
NA

GO:0003891

NA

Details: 
NA
GO Category: 
NA

GO:0003893

NA

Details: 
NA
GO Category: 
NA

GO:0003894

NA

Details: 
NA
GO Category: 
NA

GO:0003895

NA

Details: 
NA
GO Category: 
NA

GO:0015999

NA

Details: 
NA
GO Category: 
NA

GO:0016000

NA

Details: 
NA
GO Category: 
NA

GO:0016448

NA

Details: 
NA
GO Category: 
NA

GO:0016449

NA

Details: 
NA
GO Category: 
NA

GO:0016450

NA

Details: 
NA
GO Category: 
NA

GO:0016451

NA

Details: 
NA
GO Category: 
NA

GO:0016452

NA

Details: 
NA
GO Category: 
NA

GO:0019984

NA

Details: 
NA
GO Category: 
NA

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