262874 TIP120 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262874	chr_6	TIP120 superfamily	1006834	1011283	+	TIP120 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442356	Thaps262874.4, Thaps262874.6, Thaps262874.7, Thaps262874.1, Thaps262874.2, Thaps262874.5, Thaps262874.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0196

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0255	0.31	150 10000

Most Highly Correlated Transcripts

25363 Zw10 superfamily 0.8965	bd392 (bd392) DEXDc 0.89	4445 hypothetical protein 0.8848	8990 DAP2 0.8805	22075 Hydrolase_like superfamily 0.8681	37662 ATPase-IIA1_Ca 0.8676
263653 P-ATPase-V 0.8666	24683 Raptor_N 0.8616	24178 (Tp_Hox3) regulator [Rayko] 0.8581	269540 (CHC) Clathrin 0.8566

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TIP120 superfamily		TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and neddylation-...	-	98.0651	8.03E-23	1187 - 1343	superfamily	254931

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46608	PHATRDRAFT_46608	197980	254397	Not available	Cre03.g177053.t1.1	AT2G02560.2	493289

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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