263010 KU superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263010 chr_6 KU superfamily 1734731 1736965 + KU superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0247

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0080
 0.40

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.8981

25162

hypothetical protein
0.8977

7683

DUF3395 superfamily
0.891

39741

(APM3) AP-3_Mu3_Cterm
0.8892

264070

SRP54
0.8855

8051

PLN02517 superfamily
0.885

269660

hypothetical protein
0.8835

bd874

(bd874) NA
0.8829

6458

Ssu72 superfamily
0.8822

3680

hypothetical protein
0.8802

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KU superfamily Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-... - 114.685 1.74E-28 255 - 530 superfamily 261400

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45914 PHATRDRAFT_45914 235894 13220 Not available Not available Not available 484094

KEGG

KEGG description KEGG Pathway
Non-homologous end-joining map03450

GO Terms

GO:0003677 GO:0004003 GO:0006303 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0004003

ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
GO Category: 
MF

GO:0006303

double-strand break repair via nonhomologous end joining

Details: 
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends.
GO Category: 
BP

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