263012 Ras_like_GTPase superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263012	chr_6	Ras_like_GTPase superfamily	1737439	1739820	-	Ras_like_GTPase superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446324	Thaps263012.2, Thaps263012.5, Thaps263012.4, Thaps263012.3, Thaps263012.1, Thaps263012.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0406

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0243	0.36	2600 820

Most Highly Correlated Transcripts

13459 HslU 0.904	22902 hypothetical protein 0.9003	20633 Aa_trans superfamily 0.8991	25198 HA 0.8986	20984 hypothetical protein 0.8867	1218 Aa_trans superfamily 0.8867
28651 (AAT1_1) PLN02644 0.885	11478 hypothetical protein 0.8794	4482 hypothetical protein 0.8778	1275 hypothetical protein 0.8756

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	147.484	2.54E-41	1 - 161	superfamily	266525
COG1100		GTPase SAR1 and related small G proteins [General function prediction only]	-	68.8339	2.36E-13	1 - 165	multi-dom	224025

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45953	PHATRDRAFT_45953	274669	259582	Not available	Cre08.g375200.t1.2	AT5G27540.2	476915

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005525 GO:0007264 GO:0005509 GO:0015031 -

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