263310 GH38N_AMII_ER_cytosolic
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263310 chr_7 GH38N_AMII_ER_cytosolic 1883304 1885894 + GH38N_AMII_ER_cytosolic

Synonyms

NCBI ID Ensembl Genomes exon ID
7450614 Thaps263310.3, Thaps263310.1, Thaps263310.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0166

Most Highly Correlated Transcripts

12836

EEP superfamily
0.8101

1674

hypothetical protein
0.8085

25498

E3_UbLigase_R4 superfamily
0.808

12899

AAA
0.807

5743

BTB
0.8069

11261

WD40 superfamily
0.8066

5574

SufI
0.8054

22907

hypothetical protein
0.8044

24997

hypothetical protein
0.7988

5370

hypothetical protein
0.7988

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH38N_AMII_ER_cytosolic N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases;... cl17191 305.585 2.79E-97 80 - 331 specific 212101
GH38-57_N_LamB_YdjC_SF superfamily Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/... - 305.585 2.79E-97 80 - 331 superfamily 266542
Glyco_hydro_38C superfamily Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of... - 137.997 5.89E-35 447 - 819 superfamily 254403
AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] - 298.594 2.64E-87 71 - 818 multi-dom 223460

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre10.g437950.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004559 GO:0005975 -

GO:0004559

alpha-mannosidase activity

Details: 
Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

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