263349 COG4178
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263349 chr_8 COG4178 215567 217899 - COG4178

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0193

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0194
 0.41

Most Highly Correlated Transcripts

24855

hypothetical protein
0.8902

263504

sensory_box
0.8889

24990

hypothetical protein
0.8839

260758

TFCD_C
0.8812

263019

PLN02818
0.8802

263989

(HSF13) hypothetical protein
0.8787

bd668

(bd668) NA
0.8737

bd794

(bd794) NA
0.8717

264064

SbcC
0.865

3551

hypothetical protein
0.8626

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCD_peroxisomal_ALDP ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding... cl17201 217.021 7.91E-67 384 - 605 specific 213190
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 217.021 7.91E-67 384 - 605 superfamily 266551
ABC_membrane_2 superfamily ABC transporter transmembrane region 2; This domain covers the transmembrane of a small family of... - 183.97 4.49E-53 40 - 317 superfamily 260492
COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function... - 476.031 1.47E-160 40 - 605 multi-dom 226646

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22803 PHATRDRAFT_22803 206451 195344 Not available Not available Not available 333467

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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