263630 (MTS) tRNA_bind_EMAP-II_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263630 chr_10 (MTS) tRNA_bind_EMAP-II_like 233702 235128 + tRNA_bind_EMAP-II_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451053 Thaps263630.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

27083

eIF3_N superfamily
0.9104

10273

zf-met2
0.9074

35933

Paf67 superfamily
0.9059

35164

acolac_lg
0.905

269966

(VTS1) PTZ00419
0.9014

269018

hypothetical protein
0.9008

22672

hypothetical protein
0.8969

39022

COG2319
0.8921

37327

tRNA_Me_trans
0.8884

27873

PLN02274
0.8864

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA... cl00320 174.339 1.34E-52 333 - 436 specific 239198
tRNA_bindingDomain superfamily The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a... - 174.339 1.34E-52 333 - 436 superfamily 260352

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10666 PHATRDRAFT_10666 143786 154883 Not available Cre01.g046652.t1.1 AT3G59980.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000049 GO:0004812 GO:0016876 -

GO:0000049

tRNA binding

Details: 
Interacting selectively and non-covalently with transfer RNA.
GO Category: 
MF

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0016876

ligase activity, forming aminoacyl-tRNA and related compounds

Details: 
Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound.
GO Category: 
MF

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