263899 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263899	chr_12	COG3899	464723	469381	-	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447538	Thaps263899.4, Thaps263899.3, Thaps263899.6, Thaps263899.2, Thaps263899.1, Thaps263899.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0473

Most Highly Correlated Transcripts

12645 MYSc 0.9084	1268 hypothetical protein 0.9027	22916 DUF1162 superfamily 0.9007	24562 hypothetical protein 0.8956	262797 Sec7 0.8914	37366 Peptidase_C19 superfamily 0.8902
262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.8901	262607 WD40 superfamily 0.8855	9270 hypothetical protein 0.8834	264262 COG3899 0.8798

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	99.8445	1.19E-23	510 - 706	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	99.8445	1.19E-23	510 - 706	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	327.818	1.79E-95	510 - 1250	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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