264261 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264261	chr_14	COG3899	972687	977589	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451602	Thaps264261.1, Thaps264261.3, Thaps264261.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0469

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0061	0.42	65 13

Most Highly Correlated Transcripts

263610 COG3899 0.9156	10298 hypothetical protein 0.8915	9257 COG3899 0.8839	25078 hypothetical protein 0.8777	263599 COG3899 0.8767	264262 COG3899 0.874
24852 hypothetical protein 0.8675	4672 hypothetical protein 0.8636	21549 hypothetical protein 0.8603	25871 hypothetical protein 0.8593

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	75.9621	2.21E-15	637 - 832	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	75.9621	2.21E-15	637 - 832	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	259.253	7.47E-72	638 - 1406	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments