264430 (GGPS3) Trans_IPPS_HT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264430 chr_17 (GGPS3) Trans_IPPS_HT 206115 207505 + Trans_IPPS_HT

Synonyms

NCBI ID Ensembl Genomes exon ID
7453136 Thaps264430.1, Thaps264430.3, Thaps264430.4, Thaps264430.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0430

Most Highly Correlated Transcripts

40200

TRX_reduct
0.9249

268443

SAICAR_synt_Sc
0.9246

267979

HCO3_cotransp superfamily
0.9201

19158

GRX_PICOT_like
0.915

23550

hypothetical protein
0.9039

bd690

(bd690) NA
0.9036

5178

MPN superfamily
0.8995

5270

Methyltransf_16 superfamily
0.8979

24619

2-Hacid_dh_1
0.8949

24051

hypothetical protein
0.8947

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail; These trans-Isoprenyl Diphosphate Synthases (... cl00210 186.218 2.49E-56 16 - 229 specific 173833
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 186.218 2.49E-56 16 - 229 superfamily 260263

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47271 PHATRDRAFT_47271 185189 29177 470946 Not available Not available 516057

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008299 -

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

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