264726 REC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264726 chr_20 REC 601217 604438 - REC

Synonyms

NCBI ID Ensembl Genomes exon ID
7443401 Thaps264726.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0104

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0073
 0.47

Most Highly Correlated Transcripts

269724

PP2Cc
0.9036

268671

MPP_superfamily superfamily
0.8972

262923

Peptidase_M8 superfamily
0.8891

262250

nuc_hydro superfamily
0.8797

4938

Methyltransf_6 superfamily
0.8787

36007

Aldolase_II superfamily
0.8732

19895

BTB
0.8731

36525

PRK09427
0.873

37562

TyrKc
0.8712

30701

PRK05279
0.8663

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... cl19078 93.0241 7.11E-22 947 - 1068 specific 238088
REC superfamily Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... - 93.0241 7.11E-22 947 - 1068 superfamily 267431
LRR_RI superfamily Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue... - 91.6481 4.42E-20 305 - 599 superfamily 238064
OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain... - 70.0185 2.44E-13 945 - 1066 multi-dom 223816

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8970 PHATRDRAFT_8970 Not available Not available 236263 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000156 GO:0000160 GO:0003677 GO:0006355 -

GO:0000156

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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