268127 (Lhcf9) PLN00120Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268127	chr_1	(Lhcf9) PLN00120	2637653	2638758	+	PLN00120

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445011	Thaps268127.1, Thaps268127.3, Thaps268127.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0218	0.15	610 9100

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9817	bd1820 (bd1820) Fasciclin 0.9804	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9791	270241 (Lhcf11) fucoxanthin-chlorophyll a-c binding protein, plastid precursor 0.9711	5174 (Lhcf8) PLN00120 0.9668	268304 hypothetical protein 0.9659
42962 (Lhcf5) PLN00120 0.9655	39813 Chloroa_b-bind superfamily 0.9633	270233 hypothetical protein 0.9632	21667 (Lhcf7) fucoxanthin chlorophyll a/c light-harvesting protein, major type 0.9592

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN00120		fucoxanthin-chlorophyll a-c binding protein; Provisional	cl02879	324.003	6.67E-113	1 - 209	specific	215063
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	324.003	6.67E-113	1 - 209	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	269543	304112	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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