268544 PLN02465Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268544	chr_3	PLN02465	1878328	1880215	-	PLN02465

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452052	Thaps268544.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0002

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0108	0.45	0.00031 42

Most Highly Correlated Transcripts

4524 DHQS 0.9001	261823 FIG superfamily 0.8717	19158 GRX_PICOT_like 0.8706	13393 PLN02321 0.8696	269624 TIM_phosphate_binding superfamily 0.8619	35136 NA 0.8571
268062 PRK14293 0.8491	36007 Aldolase_II superfamily 0.8484	38707 Aldolase_Class_I superfamily 0.848	269901 spermidine synthase 0.8422

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FAD_binding_4		FAD binding domain; This family consists of various enzymes that use FAD as a co-factor, most of...	cl19922	110.382	3.31E-28	111 - 234	specific	250709
FAD_binding_4 superfamily		FAD binding domain; This family consists of various enzymes that use FAD as a co-factor, most of...	-	110.382	3.31E-28	111 - 234	superfamily	268275
ALO superfamily		D-arabinono-1,4-lactone oxidase; This domain is specific to D-arabinono-1,4-lactone oxidase EC:1.1....	-	80.0056	6.82E-17	266 - 605	superfamily	252326
PLN02465		L-galactono-1,4-lactone dehydrogenase	-	836.426	0	1 - 618	multi-dom	215258

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_23292	PHATRDRAFT_23292	183441	296668	70809	Cre13.g567100.t1.1	AT3G47930.1	485337

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 GO:0016633 -

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