268889 SNF2_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268889 chr_5 SNF2_N 1006604 1010594 + SNF2_N

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0235

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

24465

hypothetical protein
0.8531

12836

EEP superfamily
0.8455

42074

PRK09224
0.8451

11664

DUF3510
0.8291

9650

hypothetical protein
0.8262

22559

hypothetical protein
0.8227

8885

DUF3510
0.8214

22367

MPP_superfamily superfamily
0.8188

22573

2OG-FeII_Oxy_3 superfamily
0.8088

bd721

(bd721) NA
0.8042

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 93.0712 4.43E-22 536 - 671 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 93.0712 4.43E-22 536 - 671 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 64.2808 3.95E-12 12 - 120 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 64.2808 3.95E-12 12 - 120 superfamily 266587
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 181.716 7.65E-52 12 - 418 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28568 PHATRDRAFT_28568 209064 186386 467421 Cre11.g479300.t1.1 AT1G05120.1 566639

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0000151 GO:0004842 GO:0008270 GO:0016567 GO:0004003 GO:0004004 GO:0008094 GO:0008186 GO:0015462 GO:0015616 GO:0016887 GO:0017116 GO:0042623 GO:0042624 GO:0042625 GO:0042626 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

GO:0004003

ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
GO Category: 
MF

GO:0004004

ATP-dependent RNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
GO Category: 
MF

GO:0008094

DNA-dependent ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO Category: 
MF

GO:0008186

RNA-dependent ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
GO Category: 
MF

GO:0015462

protein-transmembrane transporting ATPase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + protein(out) = ADP + phosphate + protein(in).
GO Category: 
MF

GO:0015616

DNA translocase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded DNA molecule.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0017116

single-stranded DNA-dependent ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of single-stranded DNA; drives the unwinding of a DNA helix.
GO Category: 
MF

GO:0042623

ATPase activity, coupled

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
GO Category: 
MF

GO:0042624

ATPase activity, uncoupled

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction is not directly coupled to any other reaction.
GO Category: 
MF

GO:0042625

ATPase activity, coupled to transmembrane movement of ions

Details: 
Catalysis of the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate.
GO Category: 
MF

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

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