269399 PLN02678
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269399 chr_9 PLN02678 85161 86994 - PLN02678

Synonyms

NCBI ID Ensembl Genomes exon ID
7449259 Thaps269399.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0290

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

269616

PLN03127
0.916

42226

PLN03233
0.9152

7151

hypothetical protein
0.9042

27083

eIF3_N superfamily
0.8938

268296

(RM12) Ribosomal_L7_L12
0.8918

38472

HA2
0.8913

26071

(PSB_1) Ntn_hydrolase superfamily
0.8888

42621

HisS
0.8874

269925

AAA_12 superfamily
0.8862

264345

SpoU
0.8845

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the... cl00268 441.613 3.11E-153 166 - 468 specific 238393
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 441.613 3.11E-153 166 - 468 superfamily 260313
Seryl_tRNA_N superfamily Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA... - 87.2684 1.08E-20 3 - 114 superfamily 251274
Seryl_tRNA_N superfamily Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA... - 87.2684 1.08E-20 3 - 114 superfamily 251274
PLN02678 seryl-tRNA synthetase - 783.508 0 2 - 492 multi-dom 215364

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30572 PHATRDRAFT_30572 192640 245795 421500 Cre03.g189400.t1.2 AT5G27470.1 537011

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004828 GO:0006434 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004828

serine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).
GO Category: 
MF

GO:0006434

seryl-tRNA aminoacylation

Details: 
The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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