269663 (COP4) SEC21Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269663	chr_13	(COP4) SEC21	218482	221767	+	SEC21

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445713	Thaps269663.3, Thaps269663.6, Thaps269663.2, Thaps269663.1, Thaps269663.4, Thaps269663.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0207

Most Highly Correlated Transcripts

26212 (COP2) COG5096 0.9412	2328 hypothetical protein 0.9174	24334 EXS superfamily 0.907	21420 hypothetical protein 0.9058	36372 S_TKc 0.9043	24233 DUF1620 0.9032
21799 GCV_T superfamily 0.8996	12836 EEP superfamily 0.8995	24735 EMP70 0.898	15977 (DGK) DAGK_acc 0.8952

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COP-gamma_platf superfamily		Coatomer gamma subunit appendage platform subdomain; COPI-coated vesicles function in retrograde...	-	157.727	3.27E-44	644 - 777	superfamily	255017
COP-gamma_platf superfamily		Coatomer gamma subunit appendage platform subdomain; COPI-coated vesicles function in retrograde...	-	157.727	3.27E-44	644 - 777	superfamily	255017
SEC21		Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	-	517.63	6.80E-169	41 - 903	multi-dom	227565

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_10209	PHATRDRAFT_10209	214590	70416	454160	Cre06.g310750.t1.2	AT4G34450.1	537097

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments