2880 TspO_MBR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2880 chr_2 TspO_MBR 2108627 2109538 + TspO_MBR

Synonyms

NCBI ID Ensembl Genomes exon ID
7452508 Thaps2880.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0034

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

4108

hypothetical protein
0.828

32485

PLN02681
0.8253

10718

hypothetical protein
0.8013

31265

(CAT1_1) Mito_carr
0.7883

28865

AarF
0.7873

29728

NADB_Rossmann superfamily
0.7814

bd1938

(bd1938) NA
0.7772

bd1813

(bd1813) NA
0.774

6760

(Tp_sigma70.7) regulator [Rayko]
0.7691

980

hypothetical protein
0.7582

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TspO_MBR TspO/MBR family; Tryptophan-rich sensory protein (TspO) is an integral membrane protein that acts... cl01379 99.5676 1.42E-25 135 - 297 specific 251713
TspO_MBR superfamily TspO/MBR family; Tryptophan-rich sensory protein (TspO) is an integral membrane protein that acts... - 99.5676 1.42E-25 135 - 297 superfamily 260907

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49987 PHATRDRAFT_49987 195390 169171 109281 Cre03.g175500.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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