2958 PROCN
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2958 chr_2 PROCN 2333979 2340370 + PROCN

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0058

Most Highly Correlated Transcripts

4866

PROCN
0.9579

33225

MYSc
0.9546

262826

DUF3608 superfamily
0.942

268454

CAP_ED
0.9413

5777

PRO8NT
0.941

262645

Glyco_18
0.937

263191

PLN03076
0.9358

5776

PROCN superfamily
0.9354

262171

CAP_ED
0.9353

12602

MYSc
0.9351

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 642.937 0 980 - 1389 superfamily 116688
PROCN superfamily PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8... - 642.937 0 980 - 1389 superfamily 116688
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 291.914 2.33E-90 533 - 669 superfamily 149261
PRO8NT superfamily PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA... - 291.914 2.33E-90 533 - 669 superfamily 149261
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 195.924 1.98E-55 1855 - 1958 superfamily 265414
RRM_4 superfamily RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome... - 131.211 5.56E-35 1575 - 1668 superfamily 192639
RRM_4 superfamily RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome... - 131.211 5.56E-35 1575 - 1668 superfamily 192639
RNase_H_like superfamily Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of... - 93.9504 1.14E-20 1758 - 1804 superfamily 265450

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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