29850 PLN03132
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29850 chr_13 PLN03132 544488 546194 - PLN03132

Synonyms

NCBI ID Ensembl Genomes exon ID
7446937 Thaps29850.2, Thaps29850.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0147

Most Highly Correlated Transcripts

269624

TIM_phosphate_binding superfamily
0.9304

23205

hypothetical protein
0.9272

261400

NA
0.9183

268257

fabG
0.912

30701

PRK05279
0.9086

13393

PLN02321
0.9081

23249

ETC_C1_NDUFA4 superfamily
0.9014

3180

hypothetical protein
0.8999

37118

FeThRed_B
0.8959

269335

OCH1
0.8952

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Complex1_51K superfamily Respiratory-chain NADH dehydrogenase 51 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd... - 202.318 2.50E-62 89 - 258 superfamily 250674
Complex1_51K superfamily Respiratory-chain NADH dehydrogenase 51 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd... - 202.318 2.50E-62 89 - 258 superfamily 250674
NADH_4Fe-4S NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; NADH-ubiquinone oxidoreductase-F iron-... cl11211 81.8137 2.35E-19 373 - 418 specific 256074
NADH_4Fe-4S superfamily NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; NADH-ubiquinone oxidoreductase-F iron-... - 81.8137 2.35E-19 373 - 418 superfamily 264279
PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional - 898.463 0 16 - 474 multi-dom 178678

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_43944 PHATR_43944 278067 67680 122003 Cre10.g422600.t1.1 AT5G08530.1 350142

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0005506 GO:0006120 GO:0008137 GO:0010181 GO:0006118 GO:0016651 GO:0051287 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0006120

mitochondrial electron transport, NADH to ubiquinone

Details: 
The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.
GO Category: 
BP

GO:0008137

NADH dehydrogenase (ubiquinone) activity

Details: 
Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO Category: 
MF

GO:0010181

FMN binding

Details: 
Interacting selectively and non-covalently with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016651

oxidoreductase activity, acting on NAD(P)H

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

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