30969 (Tp_Myb1R11) COG5114
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30969 chr_1 (Tp_Myb1R11) COG5114 1426093 1429561 - COG5114

Synonyms

NCBI ID Ensembl Genomes exon ID
7451526 Thaps30969.4, Thaps30969.1, Thaps30969.2, Thaps30969.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0333

Most Highly Correlated Transcripts

10510

hypothetical protein
0.8973

37609

PKc_like superfamily
0.8924

38475

HA2
0.887

267979

HCO3_cotransp superfamily
0.8759

270222

0.8721

261324

PLN02724
0.8692

25214

PRK02224
0.8687

269496

(Tp_TAZ3_PHD1) KAT11 superfamily
0.8682

262088

CHD
0.8673

268118

WD40
0.8647

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related... cl00295 62.6952 3.09E-12 281 - 310 specific 239075
ZZ superfamily Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ... - 62.6952 3.09E-12 281 - 310 superfamily 241760
COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] - 234.579 2.52E-69 281 - 686 multi-dom 227445

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_1785 PHATRDRAFT_1785 138305 250307 202596 Cre02.g089150.t1.1 AT4G16420.2 551398

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008270 GO:0003677 GO:0005634 -

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

Add comment

Log in to post comments