269496 (Tp_TAZ3_PHD1) KAT11 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269496 chr_10 (Tp_TAZ3_PHD1) KAT11 superfamily 405989 408918 + KAT11 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445864 Thaps269496.1, Thaps269496.3, Thaps269496.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0473

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0095
 0.37

Most Highly Correlated Transcripts

268196

PHD
0.908

3375

(Tp_Myb2R2) regulator [Rayko]
0.9023

25603

hypothetical protein
0.9006

10510

hypothetical protein
0.8994

20675

WD40 superfamily
0.895

25435

hypothetical protein
0.8941

22442

CHD
0.8936

10753

hypothetical protein
0.8914

5875

hypothetical protein
0.8903

24235

Peptidase_C19 superfamily
0.8903

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KAT11 superfamily Histone acetylation protein; Histone acetylation is required in many cellular processes including... - 189.548 1.22E-53 343 - 627 superfamily 261185
Bromodomain superfamily Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone... - 134.38 1.18E-36 51 - 146 superfamily 261339

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45703 PHATRDRAFT_45703 181388 296830 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003712 GO:0005634 GO:0006355 GO:0003677 GO:0003713 GO:0045449 -

GO:0003712

transcription cofactor activity

Details: 
Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003713

transcription coactivator activity

Details: 
Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
GO Category: 
MF

GO:0045449

NA

Details: 
NA
GO Category: 
NA

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