31912 (PPI1) cyclophilin_ABH_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31912	chr_2	(PPI1) cyclophilin_ABH_like	2251100	2251939	+	cyclophilin_ABH_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452903	Thaps31912.5, Thaps31912.3, Thaps31912.4, Thaps31912.1, Thaps31912.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0175

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0246	0.41	0.00038 0.0025

Most Highly Correlated Transcripts

bd1662 (bd1662) TIGR00367 0.9357	bd1154 (bd1154) tpt 0.8891	bd687 (bd687) NA 0.8843	24816 (ASA) PRK05425 0.8778	bd1765 (bd1765) NA 0.8746	bd258 (bd258) HU 0.8683
263371 COG5075 0.8621	269320 (DGD2) UGD_SDR_e 0.8562	1247 (CYS3) CBS_like 0.8526	10366 hypothetical protein 0.8517

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
cyclophilin_ABH_like		cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans...	cl00197	298.017	7.39E-104	13 - 169	specific	238907
cyclophilin superfamily		cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic...	-	298.017	7.39E-104	13 - 169	superfamily	260252

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_34933	PHATRDRAFT_34933	267139	188579	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006457 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

Add comment

Log in to post comments