31928 ATM1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31928 chr_2 ATM1 697073 699553 - ATM1

Synonyms

NCBI ID Ensembl Genomes exon ID
7446502 Thaps31928.1, Thaps31928.3, Thaps31928.4, Thaps31928.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0120

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0097
 0.39

Most Highly Correlated Transcripts

13308

PLN02948
0.9312

267979

HCO3_cotransp superfamily
0.9157

268443

SAICAR_synt_Sc
0.8833

6642

hypothetical protein
0.8747

900

POP1 superfamily
0.8724

40200

TRX_reduct
0.8722

31932

hypothetical protein
0.8678

22316

hypothetical protein
0.8659

20925

hypothetical protein
0.8604

38509

YihA_EngB
0.8598

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 344.599 1.00E-113 440 - 686 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 75.7924 1.92E-15 86 - 383 superfamily 250039
ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [... - 425.232 4.21E-141 167 - 684 multi-dom 227590

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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