32845 SDR_a5Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32845	chr_3	SDR_a5	1208255	1209413	+	SDR_a5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441892	Thaps32845.2, Thaps32845.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0029

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0214	0.34	0.0013 2.6

Most Highly Correlated Transcripts

bd1645 (bd1645) tpt 0.9204	31829 CBS_like 0.9005	bd298 (bd298) ABM superfamily 0.8961	866 S14_ClpP_2 0.8907	bd1765 (bd1765) NA 0.8893	9513 hypothetical protein 0.8805
1219 PAP_fibrillin superfamily 0.8792	1512 hypothetical protein 0.8791	33035 YGGT 0.8788	16295 FBPase 0.8771

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SDR_a5		atypical (a) SDRs, subgroup 5; This subgroup contains atypical SDRs, some of which are identified...	cl09931	148.153	1.28E-42	82 - 316	specific	187554
NADB_Rossmann superfamily		Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD...	-	148.153	1.28E-42	82 - 316	superfamily	263925

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
11314		Not available	142207	42146	362530	Cre06.g279850.t1.2	AT5G02240.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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