33288 REC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33288 chr_4 REC 2101203 2102318 + REC

Synonyms

NCBI ID Ensembl Genomes exon ID
7452226 Thaps33288.2, Thaps33288.1, Thaps33288.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0195

Most Highly Correlated Transcripts

2996

hypothetical protein
0.8757

40200

TRX_reduct
0.8665

22679

CbiO
0.8597

262348

53EXOc
0.8579

20874

COG0390
0.8539

268443

SAICAR_synt_Sc
0.8521

23275

PLN02688
0.8514

31928

ATM1
0.8491

21788

hypothetical protein
0.8469

10895

PLN02852
0.8466

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... cl19078 91.0981 4.86E-23 65 - 181 specific 238088
REC superfamily Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... - 91.0981 4.86E-23 65 - 181 superfamily 267431
PRK10955 DNA-binding transcriptional regulator CpxR; Provisional - 63.2832 2.57E-12 64 - 269 multi-dom 182864

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11994 PHATRDRAFT_11994 210668 301296 69109 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 GO:0000156 GO:0000160 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0000156

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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