33625 (top3a) TopA
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
33625 chr_4 (top3a) TopA 1580581 1583628 + TopA
NCBI ID Ensembl Genomes exon ID
7451898 Thaps33625.1, Thaps33625.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0192
PIG-L
0.9192
NT_PAP_TUTase
0.9133
hypothetical protein
0.9073
NAD_binding_8 superfamily
0.9072
O-FucT_like
0.9059
S_TKc
0.9051
LETM1 superfamily
0.9038
Beach
0.899
Cas1_AcylT superfamily
0.8965
Bac_rhamnosid superfamily
0.896
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 388.501 2.67E-125 187 - 619 superfamily 238110
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 388.501 2.67E-125 187 - 619 superfamily 238110
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 104.238 2.04E-25 6 - 182 superfamily 260587
TopA Topoisomerase IA [DNA replication, recombination, and repair] - 420.09 9.54E-135 9 - 608 multi-dom 223624
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47417 PHATRDRAFT_47417 247872 323958 74124 Cre17.g725100.t1.2 AT5G63920.1 470148
KEGG description KEGG Pathway
Homologous recombination map03440
GO:0003677 GO:0003917 GO:0006265 GO:0006268 GO:0003916 GO:0003676 GO:0006304 -

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

DNA topoisomerase type I activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
GO Category: 
MF

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP

DNA unwinding involved in DNA replication

Details: 
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
GO Category: 
BP

DNA topoisomerase activity

Details: 
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
GO Category: 
MF

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

DNA modification

Details: 
The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.
GO Category: 
BP
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