35036 DER1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35036	chr_6	DER1 superfamily	1227951	1228793	+	DER1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442397	Thaps35036.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0208

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0140	0.29	0.25 0.43

Most Highly Correlated Transcripts

3071 NA 0.9138	23341 hypothetical protein 0.8978	7597 2A0111 0.8926	8303 Glyco_trans_1_2 0.8857	10892 hypothetical protein 0.8764	263714 LPLAT_GPAT 0.8757
2553 MDR1 0.8752	20846 LPLAT_MGAT-like 0.8747	7516 Aldo_ket_red 0.8744	4318 TIM21 superfamily 0.8695

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DER1 superfamily		Der1-like family; The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of...	-	107.751	3.51E-28	23 - 220	superfamily	266852

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_6076	PHATRDRAFT_6076	272386	293290	Not available	Cre12.g523500.t1.2	Not available	321455

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

Not available -

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