370 (RIR1_1) PLN02437
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
370 chr_4 (RIR1_1) PLN02437 401631 404297 + PLN02437

Synonyms

NCBI ID Ensembl Genomes exon ID
7442086 Thaps370.3, Thaps370.2, Thaps370.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0277
 0.16

Most Highly Correlated Transcripts

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9644

1393

(CAP1) Smc
0.9541

4607

hypothetical protein
0.9529

32555

RNRR2
0.9422

8522

RNRR2
0.9418

7092

DOMON_DOH
0.9403

4688

hypothetical protein
0.9398

262006

alpha_CA_prokaryotic_like
0.9313

7100

Condensin2nSMC
0.9297

bd1173

(bd1173) S_TKc
0.929

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNR_I Class I ribonucleotide reductase; Ribonucleotide reductase (RNR) catalyzes the reductive synthesis... cl09939 731.267 0 167 - 747 specific 153088
RNR_PFL superfamily Ribonucleotide reductase and Pyruvate formate lyase; Ribonucleotide reductase (RNR) and pyruvate... - 731.267 0 167 - 747 superfamily 245211
ATP-cone superfamily ATP cone domain; ATP cone domain. - 69.2289 4.07E-14 1 - 89 superfamily 251987
ATP-cone superfamily ATP cone domain; ATP cone domain. - 69.2289 4.07E-14 1 - 89 superfamily 251987
PLN02437 ribonucleoside--diphosphate reductase large subunit - 1634.45 0 1 - 813 multi-dom 178056

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 262579 Not available 212824 Cre12.g492950.t1.2 AT2G21790.1 246827

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004748 GO:0005971 GO:0006260 -

GO:0004748

ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

Details: 
Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.
GO Category: 
MF

GO:0005971

ribonucleoside-diphosphate reductase complex

Details: 
An enzyme complex composed of 2-4 or more subunits, which usually contains nonheme iron and requires ATP for catalysis. Catalyzes the formation of 2'-deoxyribonucleoside diphosphate from ribonucleoside diphosphate, using either thioredoxin disulfide or glutaredoxin disulfide as an acceptor.
GO Category: 
CC

GO:0006260

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

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