37288 PLN02487Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37288	chr_14	PLN02487	437379	439193	+	PLN02487

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps37288.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0014

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0203	0.30	0.00019 0.029

Most Highly Correlated Transcripts

24832 hypothetical protein 0.9994	270386 hypothetical protein 0.9067	11086 hypothetical protein 0.8967	22863 COG1026 0.893	18078 Gph 0.8871	3853 DUF3493 0.8816
bd1758 (bd1758) NA 0.8769	34543 (PPC2) PEPcase superfamily 0.8739	bd1658 (bd1658) NA 0.8731	30851 (CLPC2) clpA 0.8728

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NAD_binding_8		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	cl19134	67.1359	1.01E-13	90 - 155	specific	257775
NAD_binding_8 superfamily		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	-	67.1359	1.01E-13	90 - 155	superfamily	267487
PLN02487		zeta-carotene desaturase	-	1007.79	0	5 - 581	multi-dom	215268

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9040	PHATRDRAFT_9040	228833	201585	421941	Cre07.g314150.t1.2	AT3G04870.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 GO:0016491 GO:0016719 -

Add comment

Log in to post comments