37786 SrmBThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37786	chr_16a	SrmB	354745	357429	+	SrmB

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450015	Thaps37786.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0195	0.28	0.52 1.7

Most Highly Correlated Transcripts

12971 WD40 superfamily 0.922	17657 HSR1_MMR1 0.9105	268130 hypothetical protein 0.9062	16947 DEXDc superfamily 0.9038	36609 PRK00142 0.9029	268252 Utp21 superfamily 0.8996
36798 S_TKc 0.8992	40884 (RPA1) RNAP_I_RPA1_N 0.8977	25129 hypothetical protein 0.8949	25434 PRK00142 0.8935

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DEXDc superfamily		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	149.942	7.51E-41	440 - 645	superfamily	266587
SrmB		Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /...	-	206.565	1.05E-57	424 - 879	multi-dom	223587

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_10722	PHATRDRAFT_10722	157948	101221	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

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