3785 AFD_class_I superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3785 chr_3 AFD_class_I superfamily 1794962 1796871 - AFD_class_I superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449562 Thaps3785.2, Thaps3785.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0264

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0001
 0.47

Most Highly Correlated Transcripts

264869

HELICc
0.8508

35984

hypothetical protein
0.8478

992

hypothetical protein
0.8399

7771

hypothetical protein
0.8367

11921

hypothetical protein
0.8362

1882

Gn_AT_II superfamily
0.8335

261018

PDEase_I
0.8294

262645

Glyco_18
0.8264

14616

Motor_domain superfamily
0.8251

2065

hypothetical protein
0.8235

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 163.794 2.47E-45 236 - 577 superfamily 266508

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46146 PHATRDRAFT_46146 232637 175579 Not available Not available AT1G30520.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0016207 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016207

4-coumarate-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + 4-coumarate + CoA = AMP + diphosphate + 4-coumaroyl-CoA.
GO Category: 
MF

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